RetrogeneDB ID: | retro_fcat_1963 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:9582391..9583101(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.73 % |
Parental protein coverage: | 94.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
LNISFPATGCQKLI.V.DERKLRTF.EK.MATEVA.DAL...WKGYVVRISG..DK.GFP.KQGVLT.GR | |
Retrocopy | LNISFPATGCQKLIGVNDERKLRTFDEKHMATEVAVDALSTKWKGYVVRISGDDDK*GFPTKQGVLTRGR |
Parental | VRLLLSKG-HSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKK----GEKDIPGLTDTTVPRRLGPKR |
V.L.LS.G.H...RPRRTGERK.KS..GCI.DA.LSVLNLVIVKK....GEKDI.GLT.TTVP.RLGP.R | |
Retrocopy | VCLHLSQG<HPQSRPRRTGERKHKSAQGCIGDADLSVLNLVIVKKRNKAGEKDILGLTSTTVPHRLGPQR |
Parental | ASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAA |
AS.IRKLF.LSKED.V..YVV.KPLNKEG.KPRTKAP.IQ.L..PRV.Q..RR.I.LKKQ.TKKNKEE.A | |
Retrocopy | ASGIRKLFSLSKEDGVCRYVVKKPLNKEGRKPRTKAPEIQHLFPPRVFQQTRRHITLKKQHTKKNKEETA |
Parental | EYAKLLAKRMKEAKEKRQEQIAKRRRLS |
E.AKLLAKRMKEAKE.RQEQIAKRRRLS | |
Retrocopy | EHAKLLAKRMKEAKENRQEQIAKRRRLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |