RetrogeneDB ID: | retro_fcat_1262 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:43223909..43224646(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLT-HG |
LNISFPA.GCQKLIEVDDE..LR.FYEK.MATEVAADALGE.WKGYVV.I.GGN.K.G.PMKQGVLT..G | |
Retrocopy | LNISFPAPGCQKLIEVDDEHNLRMFYEKQMATEVAADALGE*WKGYVVQITGGNNK*GSPMKQGVLT<TG |
Parental | RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI |
RV.LLLSKGHSCY.P.RTGER..KS.RGCIVDANLSV.N.VIV.KGEKDIPGLTDTTVP.RLGPKRASRI | |
Retrocopy | RVCLLLSKGHSCY*PMRTGERNHKSIRGCIVDANLSVVNWVIVNKGEKDIPGLTDTTVPCRLGPKRASRI |
Parental | RK-LFNLSKEDDV-RQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEA-AE |
.K..FNL.KED.V.R...VRKPLN.EGKKPR.KA.KIQ.LVTP.VLQHKR...ALKKQ..KKNKEEA..E | |
Retrocopy | CK<VFNLLKEDNV<RSLCVRKPLNQEGKKPRPKASKIQHLVTPCVLQHKRWHTALKKQPQKKNKEEA<SE |
Parental | YAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
YAKLLA.RMKEAKEK..EQIAKR.RLSS.RAST.KSESS.. | |
Retrocopy | YAKLLARRMKEAKEKHEEQIAKRQRLSSPRASTAKSESSER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |