RetrogeneDB ID: | retro_fcat_968 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:67959945..67960380(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.17 % |
Parental protein coverage: | 57.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
LNIS..ATGCQ.LIEVDDE.K..TFY.K.MATEVAADAL.E.WKGYVV.ISGGNDKQGFPMKQGVLT.G. | |
Retrocopy | LNISCSATGCQRLIEVDDEHKPHTFYNKGMATEVAADALDEKWKGYVVQISGGNDKQGFPMKQGVLTPGH |
Parental | VRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKK--GEKDIPGLTDTTVPRRLGPKRASR |
V.LLLSKG.SCY..R.T.ERK..SV.GCIVD.NL.VLNLVIV.K..GEKDIPG.T.TTVP...GPKR... | |
Retrocopy | VHLLLSKGYSCY*LRKTRERKCRSVWGCIVDSNLRVLNLVIVQKRGGEKDIPGVTNTTVPCHVGPKRMRG |
Parental | IRKLF |
I.KLF | |
Retrocopy | ICKLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |