RetrogeneDB ID: | retro_fcat_1108 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:102267779..102268274(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.04 % |
Parental protein coverage: | 66.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
LN.SF.ATGCQKLIEVDDER.LRTFYEKR..TEVAADALGEE.KGYV..ISGGNDKQGFPMKQGVLTHG. | |
Retrocopy | LNNSFLATGCQKLIEVDDERELRTFYEKRTVTEVAADALGEECKGYVFQISGGNDKQGFPMKQGVLTHGC |
Parental | VRLLLSKGHSCYRPRRT-GE-RKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRL-GPKRAS |
V.LL.S.G.SC.RPRRT.GE.RKR.SV..CI.D.NLSVLNLVIVK.GEKD.PGLTD.TVP.RL.GP.R.S | |
Retrocopy | VCLLPSIGPSCHRPRRTLGE<RKRRSVQACIADVNLSVLNLVIVKNGEKDTPGLTDPTVPCRL>GPQRPS |
Parental | RIRKLFNLSKEDDVRQYVVRKPLNKEG |
RI.K..NLSKEDDVRQ.VVRK..NK.G | |
Retrocopy | RICKVSNLSKEDDVRQDVVRKSPNKVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .21 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |