RetrogeneDB ID: | retro_fcat_238 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:88355334..88356072(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG-FPMKQGVLTHG |
LN.SFP....QK.IEVDDE.KL..FYEK...TEVAAD.L.EE.K..VV.ISGGNDKQG.FPM.Q.V...G | |
Retrocopy | LNVSFPDINFQKFIEVDDECKLSIFYEKHTVTEVAADVLSEE*KD*VV*ISGGNDKQG<FPMEQSVFSCG |
Parental | RVRLLLSKGHSCYR-PRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRL-GPKRAS |
...LLLSKGHSCYR..R.TGE.K.K...G.IVD.NLSVL.LVI....E.DI..L.DT.VP....GP.R.S | |
Retrocopy | YDHLLLSKGHSCYR<IRKTGEKKCKYIWGYIVDDNLSVLILVIXXXXEEDISILADTIVPCHM<GPIRVS |
Parental | RIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY |
RI.K.FNLSKEDDV.QYVVRKP.NK.GKKPRTK.PK...L.T..VLQHK...I.LKK...KKN.EEA.EY | |
Retrocopy | RICKVFNLSKEDDVHQYVVRKPINKDGKKPRTKVPKVPCLITIHVLQHKHWHIGLKKWGMKKNREEAIEY |
Parental | AKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
.KLLAKRMKE.KEK..EQ..KR..LSSL.ASTSKSE.SQK | |
Retrocopy | GKLLAKRMKETKEKHLEQNDKRKKLSSLKASTSKSECSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |