RetrogeneDB ID: | retro_fcat_1082 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:33031161..33031894(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000023109 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LNISFPATGCQKLIEVDDERKLR-TFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHG |
LNISFPATGCQKLIEVD.ERKLR.TF...RMATEVAADA.GEEWKGYVVRISGGNDKQGFPMKQGVLTHG | |
Retrocopy | LNISFPATGCQKLIEVDHERKLR>TFVV-RMATEVAADAVGEEWKGYVVRISGGNDKQGFPMKQGVLTHG |
Parental | RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI |
.V.LLLSKGHSCYRP..TGERKRKS.RGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVP.RLGPKRASRI | |
Retrocopy | PVCLLLSKGHSCYRPWKTGERKRKSARGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRI |
Parental | RKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKA-PKIQRLVTPRVLQHK-RRRIALKKQRTKKNKEEA-AE |
RKL..LSKEDD.RQYVVRKPLNKEGKKP.TKA.PK...LVTPRVLQHK.RRRIALKKQRTKKNKEEA..E | |
Retrocopy | RKLVSLSKEDDIRQYVVRKPLNKEGKKP*TKA>PK--HLVTPRVLQHKLRRRIALKKQRTKKNKEEA<SE |
Parental | YAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
.AKLLA.RMKEAKEKRQ.QIAKRRRLSSL.ASTSKSESSQK | |
Retrocopy | DAKLLA-RMKEAKEKRQGQIAKRRRLSSLTASTSKSESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .72 RPM | 411 .51 RPM |
SRP017611_liver | 0 .10 RPM | 228 .06 RPM |