RetrogeneDB ID: | retro_fcat_1934 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:83918352..83919091(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
.NISFP.TGCQKLIEV.DE.KL..F.EK.M..EVAADALGEE.KGY.V.ISGGN.KQGF.MKQGVL.HG. | |
Retrocopy | MNISFPVTGCQKLIEVVDESKLCIF*EKCMTIEVAADALGEELKGYIV*ISGGNGKQGFLMKQGVLSHGC |
Parental | VRLLLSKGHSCYRPRRTGERKRKSV-RGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI |
V.LLLSK.H.CYR..RTGERK.K.V..GCI.D.NLSVLNL..VKKGEKDIPGLTDTT.P..LGPKR..RI | |
Retrocopy | VYLLLSKEHFCYRLGRTGERKHKCV<LGCIMDTNLSVLNLIVVKKGEKDIPGLTDTTMPHCLGPKRGHRI |
Parental | RKLFNLSKEDDVRQYVVRKPLNK-EGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYA |
...F.LSK.DDV..YVVR.PLNK.EGKKP.T..PKIQ.LVTP.VLQ.K...IALKKQ.TKKNKEEAAEYA | |
Retrocopy | CRHFSLSK*DDVCRYVVRRPLNK<EGKKPKTRGPKIQHLVTPHVLQYKC*YIALKKQCTKKNKEEAAEYA |
Parental | KLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
KLLAK.MKEAKEK.QEQI.KR.RLSSLRASTSKS.SSQK | |
Retrocopy | KLLAK*MKEAKEKHQEQISKRWRLSSLRASTSKSRSSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 411 .51 RPM |
SRP017611_liver | 0 .00 RPM | 228 .06 RPM |