RetrogeneDB ID: | retro_cfam_1331 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:14056076..14056840(+) | ||
Located in intron of: | ENSCAFG00000007927 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSCAFG00000015287 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 94.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGS-NKRLFN |
MSSIGTGYDLSASTFSPDGRVF.VEYAMKAVENSSTAIGIRCKDGVVFGV.KLV.SKLYEEGS..KRLFN | |
Retrocopy | MSSIGTGYDLSASTFSPDGRVF*VEYAMKAVENSSTAIGIRCKDGVVFGVGKLVFSKLYEEGS<HKRLFN |
Parental | VDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYN-IPLKHLADRVAMYVHAYTLYSAVRPFGCSFML |
VDRHVGMAVAGLLADARSLADIAREEASNF.SNFGYN.IPLKHLAD.VAMYVHAYTLYSAVRPFGCSFML | |
Retrocopy | VDRHVGMAVAGLLADARSLADIAREEASNFISNFGYNNIPLKHLADKVAMYVHAYTLYSAVRPFGCSFML |
Parental | GSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDK |
GSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRD.VKEVAKIIYIVHDEVKD. | |
Retrocopy | GSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRD-VKEVAKIIYIVHDEVKDN |
Parental | AFELELSWVGEITKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM |
AFELELS.VGEITKGRHEI.PKD.REEAEKYAKESLKEEDESDDDNM | |
Retrocopy | AFELELSCVGEITKGRHEIFPKDVREEAEKYAKESLKEEDESDDDNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .34 RPM | 93 .78 RPM |
SRP017611_brain | 0 .32 RPM | 44 .30 RPM |
SRP017611_kidney | 1 .12 RPM | 154 .79 RPM |
SRP017611_liver | 0 .00 RPM | 42 .35 RPM |