RetrogeneDB ID: | retro_dnov_2334 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_65097:6096..6582(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSDNOG00000004077 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 66.27 % |
Parental protein coverage: | 63.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADA |
SPD..VFQVE.A.KA.ENSS....I.CK...V.GVEKLVLSKLYE....KR..NVD.HVGM.VAGLLADA | |
Retrocopy | SPDAVVFQVENAVKAMENSSKTTRILCKEDIVLGVEKLVLSKLYEKCLSKRVYNVDWHVGMVVAGLLADA |
Parental | RSLADIAREEASNFRSN-FGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLG-SYSVNDGAQLYMID |
.SLA.IAREE.SNFR.N..G..I.L.HL.DRVAMY...Y.LY.AV.PF....M...S...NDGAQL.MID | |
Retrocopy | LSLANIAREEPSNFRFN<LGHEILLEHLVDRVAMYISVYKLYRAVKPFEGCVMFS<SCGMNDGAQLHMID |
Parental | PSGVSYGYWGCAIGK-ARQAAKTEIE |
.SGVSYGYWGC.IGK..RQ.AKT.IE | |
Retrocopy | LSGVSYGYWGCIIGK<TRQGAKTKIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 46 .09 RPM |
SRP012922_cerebellum | 0 .00 RPM | 24 .19 RPM |
SRP012922_heart | 0 .00 RPM | 32 .72 RPM |
SRP012922_kidney | 0 .00 RPM | 42 .71 RPM |
SRP012922_liver | 0 .00 RPM | 30 .81 RPM |
SRP012922_lung | 0 .00 RPM | 32 .53 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 33 .41 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .95 RPM |