RetrogeneDB ID: | retro_dord_402 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_16597:18034..18411(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psma3 | ||
Ensembl ID: | ENSDORG00000002167 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type 3 [Source:MGI Symbol;Acc:MGI:104883] |
Percent Identity: | 94.49 % |
Parental protein coverage: | 52.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEM |
VAMYVHAYTLYSAVRPFGCSFMLGSYSVN.GAQLYMIDPSGVSYGYWGCAIGKARQ.AKTEIEKLQMKEM | |
Retrocopy | VAMYVHAYTLYSAVRPFGCSFMLGSYSVNGGAQLYMIDPSGVSYGYWGCAIGKARQVAKTEIEKLQMKEM |
Parental | TCRDVVKEVAKIIYIVHDEVKDKAFELELSW-VGELTKGRHEIVPKDIKEEAEKYAK |
TC.DVVKEVAKIIYI.HDE.KDKAFELELSW.VGELTKGRHEIVPK.IKEEAEKYAK | |
Retrocopy | TCHDVVKEVAKIIYIIHDEIKDKAFELELSW<VGELTKGRHEIVPKNIKEEAEKYAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |