RetrogeneDB ID: | retro_mmul_564 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:182785550..182786314(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000022587 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1856 | ||
Ensembl ID: | ENSMMUG00000003509 | ||
Aliases: | None | ||
Description: | proteasome subunit alpha type-3 [Source:RefSeq peptide;Acc:NP_001247825] |
Percent Identity: | 95.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV |
MSSIGTGYDLS.STFSPDGRVFQVE.AM.AVENSS.AIGIRCKDGVVFGVEKLVLSKLYEEGSNK.LFNV | |
Retrocopy | MSSIGTGYDLSVSTFSPDGRVFQVEHAMRAVENSSIAIGIRCKDGVVFGVEKLVLSKLYEEGSNK*LFNV |
Parental | DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS |
DRHVGM.VAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR.AMYVHAYTLYSAVRPFGCSF.LGS | |
Retrocopy | DRHVGMEVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRAAMYVHAYTLYSAVRPFGCSFILGS |
Parental | YSVNDGAQLYMIDPSGVSYGYWGCAI-GKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKA |
YSVNDGAQLYMIDPSGVSY.YWGCA..GKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKA | |
Retrocopy | YSVNDGAQLYMIDPSGVSYDYWGCAT<GKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKA |
Parental | FELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM |
FELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM | |
Retrocopy | FELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 22 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 15 .95 RPM |
SRP007412_cerebellum | 0 .13 RPM | 22 .60 RPM |
SRP007412_heart | 0 .06 RPM | 19 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .76 RPM |
SRP007412_liver | 0 .04 RPM | 25 .93 RPM |
SRP007412_testis | 0 .00 RPM | 16 .81 RPM |