RetrogeneDB ID: | retro_pabe_1120 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:60878000..60878551(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSPPYG00000005855 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 77.01 % |
Parental protein coverage: | 72.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLG |
.D..VGM..AGLLADA.SLADIAREE.SNF.S.FGYN.PLKHLA.RV.MYVHAYTLYSAVR.F..SF.LG | |
Retrocopy | LDQNVGMLAAGLLADACSLADIAREEVSNFKSDFGYNPPLKHLANRVDMYVHAYTLYSAVRSFAFSFVLG |
Parental | SYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQA-AKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDK |
SYS.ND.AQ..MID.SGV.YGYW.CA.GKARQA..KTEIEKLQMKEMTC.D.VKEVA..IYIVHD.VKDK | |
Retrocopy | SYSMNDSAQFSMIDSSGVLYGYWACATGKARQA<CKTEIEKLQMKEMTCYDTVKEVAQVIYIVHDDVKDK |
Parental | AFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM |
A....LSWV..LT.GRHEIV.KDIRE.A.KYAKESL.EED.SDDDNM | |
Retrocopy | AY--KLSWVSGLTKGRHEIVSKDIRE*ADKYAKESLSEEDKSDDDNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 18 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .16 RPM |
SRP007412_heart | 0 .00 RPM | 20 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .02 RPM |
SRP007412_liver | 0 .00 RPM | 29 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1348 |
Pan troglodytes | retro_ptro_923 |
Gorilla gorilla | retro_ggor_1049 |
Macaca mulatta | retro_mmul_2187 |