RetrogeneDB ID: | retro_itri_1317 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393439.1:86885..87264(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSSTOG00000013539 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 66.41 % |
Parental protein coverage: | 50.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKL-YEEGSNKRLFNVD |
.IGT.YDLSA.TFSPDGRVFQ.EYA....EN.STAI..RCKD......EK.VLSKL.YE...NK.L..V. | |
Retrocopy | TIGTRYDLSACTFSPDGRVFQAEYAVNS-ENGSTAIRMRCKDSAGCWIEKSVLSKL<YEKEFNK*L-SVG |
Parental | RHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR-VAMYVHAYTLYSAVRP |
.HVG.A.AGL.ADA.S.ADIA.EE.SNF.S.FG.NIPLKHL.DR.VAM..H.YTL.SAV.P | |
Retrocopy | QHVGFAIAGLFADAHSSADIAKEETSNFISIFGCNIPLKHLIDR<VAMSIHLYTLHSAVVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |