RetrogeneDB ID: | retro_rnor_183 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:65807653..65808421(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000022652 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psma3 | ||
Ensembl ID: | ENSRNOG00000007851 | ||
Aliases: | Psma3, Psma3l | ||
Description: | Proteasome subunit alpha type-3 [Source:UniProtKB/Swiss-Prot;Acc:P18422] |
Percent Identity: | 99.22 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV |
MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV | |
Retrocopy | MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV |
Parental | DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS |
DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS | |
Retrocopy | DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS |
Parental | YSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAF |
YSVNDGAQLYMIDPSGVSYGYWGCA.GKARQAAKTEIEKLQMKEMTC.DVVKEVAKIIYIVHDEVKDKAF | |
Retrocopy | YSVNDGAQLYMIDPSGVSYGYWGCATGKARQAAKTEIEKLQMKEMTCCDVVKEVAKIIYIVHDEVKDKAF |
Parental | ELELSWVGELTKGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM |
ELELSWVGELTKGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM | |
Retrocopy | ELELSWVGELTKGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .58 RPM | 37 .96 RPM |
SRP017611_kidney | 0 .98 RPM | 50 .80 RPM |
SRP017611_liver | 0 .61 RPM | 39 .40 RPM |