RetrogeneDB ID: | retro_sara_573 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_235111:168202..168796(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSSARG00000002670 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 69. % |
Parental protein coverage: | 77.65 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | IGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYN |
IGIRCKD.V..GVE..V.SKL.E..GSNK.LFNVD.H.GM.V.GLLADAR.LAD..REEASNFR.N...N | |
Retrocopy | IGIRCKDAVILGVEE*VFSKL*EK<GSNK*LFNVDQHAGMTVTGLLADARYLADTVREEASNFRFNVDCN |
Parental | IPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTE |
I.LKHL.DRVA.Y...Y.L...V..FG.SF.L.SYSVNDG.QLY...P..V.YG..GCA.GKAR.AAKTE | |
Retrocopy | ISLKHLGDRVALYIYVYALDGNVGHFGYSFLLDSYSVNDGGQLYTTEPLIVAYGCCGCALGKARWAAKTE |
Parental | IEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDIREE |
IEKLQMKE.TC..VV.EVA.K.IY.VH.EVK.KAFELELS.VGELT.GR.EIVPKD.R.. | |
Retrocopy | IEKLQMKEITCWSVVIEVA>KAIYVVHSEVKNKAFELELS*VGELTEGRQEIVPKDTRKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |