RetrogeneDB ID: | retro_mmul_2187 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:123196881..123197432(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1856 | ||
Ensembl ID: | ENSMMUG00000003509 | ||
Aliases: | None | ||
Description: | proteasome subunit alpha type-3 [Source:RefSeq peptide;Acc:NP_001247825] |
Percent Identity: | 73.8 % |
Parental protein coverage: | 72.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLG |
.D..VGM..AGLL..A.SLADIAREE.SNF.SNFGYN.PLKHLA..V.MY.HAYTLYSAVR.F..SFMLG | |
Retrocopy | LDWNVGMLAAGLLEVACSLADIAREEVSNFKSNFGYNTPLKHLANTVDMYIHAYTLYSAVRSFAFSFMLG |
Parental | SYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQA-AKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDK |
SYS.ND.AQ..M.D.S.V.YGYWGCA.GKARQA..KTEIEKL.MK..TC.D.VKEVA..IYIVHDEVKDK | |
Retrocopy | SYSMNDSAQFSMMDSSCVLYGYWGCAMGKARQA<CKTEIEKLPMKATTCYDTVKEVAQVIYIVHDEVKDK |
Parental | AFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM |
A...ELS.V..LT.GRHEIV.K.IRE.A.KYAKESL.EED.SDDDNM | |
Retrocopy | A--*ELSGVSGLTKGRHEIVSKGIRE*ADKYAKESLNEEDKSDDDNM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 22 .75 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .95 RPM |
SRP007412_cerebellum | 0 .06 RPM | 22 .60 RPM |
SRP007412_heart | 0 .00 RPM | 19 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .76 RPM |
SRP007412_liver | 0 .00 RPM | 25 .93 RPM |
SRP007412_testis | 0 .04 RPM | 16 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1348 |
Pan troglodytes | retro_ptro_923 |
Gorilla gorilla | retro_ggor_1049 |
Pongo abelii | retro_pabe_1120 |