RetrogeneDB ID: | retro_mmus_1277 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:52369179..52369688(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psma3 | ||
Ensembl ID: | ENSMUSG00000060073 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type 3 [Source:MGI Symbol;Acc:MGI:104883] |
Percent Identity: | 94.15 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFN |
MSSIGTGYDLSAS.FSPDGRVFQ.EYAMKAVENSSTAIGIRCKD.VVFGVEKLVLSKLYEE.GSNKRLFN | |
Retrocopy | MSSIGTGYDLSASRFSPDGRVFQIEYAMKAVENSSTAIGIRCKDSVVFGVEKLVLSKLYEE<GSNKRLFN |
Parental | VDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLG |
VDRHVGMAVAGLLADARSLADIARE..SNFRSNF.YNIPLKHLADRVAMYVHAYTLYS.VR.FGCSFMLG | |
Retrocopy | VDRHVGMAVAGLLADARSLADIAREASSNFRSNFDYNIPLKHLADRVAMYVHAYTLYSSVRHFGCSFMLG |
Parental | SYSANDGAQLYMIDPSGVSYGYWGCAIGKAR |
SYSANDGAQLYMI.PSGVSYGYWGCAIGKAR | |
Retrocopy | SYSANDGAQLYMINPSGVSYGYWGCAIGKAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 42 .68 RPM |
SRP007412_cerebellum | 0 .00 RPM | 29 .44 RPM |
SRP007412_heart | 0 .03 RPM | 29 .42 RPM |
SRP007412_kidney | 0 .02 RPM | 36 .23 RPM |
SRP007412_liver | 0 .00 RPM | 48 .75 RPM |
SRP007412_testis | 0 .00 RPM | 22 .55 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_35165 | 126 libraries | 253 libraries | 605 libraries | 73 libraries | 15 libraries |