RetrogeneDB ID: | retro_sara_437 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_207709:8513..8907(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSSARG00000002670 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 78.79 % |
Parental protein coverage: | 51.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEV |
.Y.....FGCSF.LGSYSVNDGAQLYMID.SGVSYGYWG.AIGKA.QAA..EIEKLQMKEMTCR.VVKEV | |
Retrocopy | IYTL*CSFGCSFILGSYSVNDGAQLYMIDTSGVSYGYWGRAIGKATQAANIEIEKLQMKEMTCRGVVKEV |
Parental | AKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDIREEAEK-YAKESLKEEDESDDDNM |
AKIIYI.HDEVK.K.FELEL.W.G.LTKGRH.I.PKDIR.EA...YAKESLKE..ESDDDN. | |
Retrocopy | AKIIYILHDEVKNKVFELELGWIGKLTKGRHYIIPKDIRKEAKN>YAKESLKEKGESDDDNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |