RetrogeneDB ID: | retro_pabe_339 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:196690442..196690870(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA3 | ||
Ensembl ID: | ENSPPYG00000005855 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532] |
Percent Identity: | 79.05 % |
Parental protein coverage: | 57.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLV-LSKLYEEGSNKRLFNV |
SSI.T.YDLSASTFSPDGRVF.VEYAMKAVENSSTA.G.RCKDG..FGVEK.V.L.KLYEEGSNKRLFN. | |
Retrocopy | SSINTRYDLSASTFSPDGRVF*VEYAMKAVENSSTATGLRCKDGGGFGVEKGV<LPKLYEEGSNKRLFNI |
Parental | DRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS |
D.HVGM.VAGLL.DA.SLAD..REEASNFRS.FGY.IP.KHLAD.VAM..H.....SAVRPFGCSF..GS | |
Retrocopy | DWHVGMVVAGLLTDAPSLADVTREEASNFRSSFGYTIPQKHLADTVAMRIHC----SAVRPFGCSFTVGS |
Parental | YSVNDGAQ |
YSVND.AQ | |
Retrocopy | YSVNDRAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 18 .19 RPM |
SRP007412_cerebellum | 0 .85 RPM | 30 .16 RPM |
SRP007412_heart | 0 .03 RPM | 20 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .02 RPM |
SRP007412_liver | 0 .03 RPM | 29 .10 RPM |