RetrogeneDB ID: | retro_dnov_701 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_982:261913..262234(+) | ||
Located in intron of: | ENSDNOG00000003935 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSDNOG00000025505 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 62.5 % |
Parental protein coverage: | 52.66 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RETRRCRTLYTSSQLCALIEAFEKNPYPGIGSREQLAKEIGISESRVQTWFQNRRSRFRGQKKREPVKDL |
RETR.C.T..TSSQL..LI.AFE..PYPG..SREQ....IG..ESRVQ..FQN.R.RF.GQ.KREPV..L | |
Retrocopy | RETRGCCTSSTSSQLGTLITAFENSPYPGLDSREQ---DIGVPESRVQVCFQNQRFRFHGQGKREPVEIL |
Parental | EQ-RQDQGQSL-DERIQGLEAIQNITNLTSN-FDFPGTRVRG |
EQ..QDQG..L...RIQG.EA.Q.ITNL.SN...FP..R.RG | |
Retrocopy | EQ<KQDQG*NL*HKRIQGVEATQKITNLPSN>V*FPWNRMRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .55 RPM | 0 .00 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .23 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy |
retro_dnov_701 ,
|
Dasypus novemcinctus | ENSDNOG00000025905 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |