RetrogeneDB ID: | retro_pabe_3376 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8_random:3704772..3705275(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSPPYG00000010457 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 72.94 % |
Parental protein coverage: | 82.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAEDTYSHKRVTTNHRRCRTKFTEEQLKILIDTFNQKPYPGYATKQKLALEINTEESRIQIWFQNRRARH |
M..DT.SHK.V.TN.R..RTK.T...LKIL..TF.QKP..GY.TKQKLAL.INTEES.IQIWFQN.RARH | |
Retrocopy | MTKDTSSHKMVATNYRCSRTKLTD-LLKILTNTFDQKPCSGYSTKQKLAL*INTEESKIQIWFQN*RARH |
Parental | GFQKRPEAETLESSQSQGQGQPGVQFQSREARRCRTTYSASQLHTLIKAFMKNPYPGIDSREELAKEIGV |
.FQKRPE.ETLESSQS.GQ.QPG..FQSREAR.C.TTYS.SQL.TLIKAF.KNPY..IDSR..LAKEI.V | |
Retrocopy | RFQKRPEPETLESSQSHGQDQPGAEFQSREARQCCTTYSTSQLCTLIKAFLKNPYLRIDSRKQLAKEISV |
Parental | PESRVQIW-FQNRRSRLL-LQRKREAVASL |
PESRVQIW.FQ..RS....LQRKRE.V.SL | |
Retrocopy | PESRVQIW>FQDQRSGIS>LQRKREPVMSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies |
retro_pabe_1192, retro_pabe_1328, retro_pabe_1805, retro_pabe_3357, retro_pabe_3376 , retro_pabe_518, retro_pabe_660, retro_pabe_802,
|
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |