RetrogeneDB ID: | retro_pvam_870 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_14196:27460..27822(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSPVAG00000003020 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 70.49 % |
Parental protein coverage: | 83.45 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | DQLKILIKAFNQKPYPGYATKQKLALEINTEESRIQVWFQNRRARHRVQKGSEPEK-DSEASQNQDFSED |
DQLK.LIKAFNQKP...YATKQKLALEINT.ESR.Q..FQN.RARH.VQ...E.E..D.EAS..QD..E. | |
Retrocopy | DQLKSLIKAFNQKPHTDYATKQKLALEINTVESRVQI*FQN*RARH*VQEKAELEE<DLEASKDQDHPEE |
Parental | KIHSRGDRRCRTSYTSFQLYTLITAFTNNPYPGIDSREQLAKEIGVPESRVQ |
KI.SR.DR....SY.S.QL..LIT.FTNNPYPGIDSRE.LA.EIGVPES.VQ | |
Retrocopy | KIYSREDR**CNSYSSSQLHILITTFTNNPYPGIDSRE*LAEEIGVPESNVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy |
retro_pvam_870 ,
|
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |