RetrogeneDB ID: | retro_nleu_2214 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397335.1:3039510..3040119(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSNLEG00000010886 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.71 % |
Parental protein coverage: | 99.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AEDTYSHKMVTANRRRCRTKFTEDQLKILINTFNQKPYPGYATKQKLALEINTEESRIQIWFQNRRARHG |
A.DT.SHKMV..NRR...TKFTEDQLKILINTFNQKPYPGYATKQ.LALEINTEE.RIQIWF.N.RAR.G | |
Retrocopy | AKDTSSHKMVATNRRSNHTKFTEDQLKILINTFNQKPYPGYATKQNLALEINTEEYRIQIWFRNQRARNG |
Parental | FQKRPEAETLESSQSQGQDQPGVEFQSREARRCRTTYSATQLHTLIEAFMKNPYPGIDSREELAKEIGVP |
FQKRPE.ETL.SS.S.GQDQPGVEFQSREAR.C.TTYS..QL.TLI.AFMKNPYPGIDSRE.LA.EIG.P | |
Retrocopy | FQKRPEPETLDSSHSYGQDQPGVEFQSREARQCCTTYSTSQLLTLIKAFMKNPYPGIDSREQLAEEIGAP |
Parental | ESRVQVSEKKYRTTALQPGQHSKTLSQK-KKEKEKVGKG---TEDTQNGTNFTS-DSHFSGARTW |
ESRVQ....K.......P.......S...KK...KV..G...TEDTQNGTN.TS..SHFS.ARTW | |
Retrocopy | ESRVQIWFPKLKI*ISSPEKREPIMSLE>KKTRGKVSEGLQGTEDTQNGTNLTS<HSHFSRARTW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies |
retro_nleu_1935, retro_nleu_2214 , retro_nleu_568,
|
Nomascus leucogenys | ENSNLEG00000016146 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |