RetrogeneDB ID: | retro_pabe_802 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:116401081..116401460(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSPPYG00000010457 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 54.26 % |
Parental protein coverage: | 62.25 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KQKLALEINTEESRIQIWFQNRRARHGFQKRPE-AETLESSQSQGQGQPGVQFQ-SREARRCRTTYSASQ |
K..L.LE.NTEESR.QIWFQN.R.....QKRP...E.LE.S..Q..GQ...Q.....EAR.C......S. | |
Retrocopy | KN*LTLESNTEESRTQIWFQN*RYGYLLQKRPRPTEALEPS--QDHGQDRRQGS>GKEARCCCSKHTFS* |
Parental | LHTLIKAFMKNPYPGIDSREELAKEIGVPESRVQIWFQNRRSRLLLQRKREAVASLEQE |
LHTLIK....NPY..IDSR..LA..IGV...RVQIWFQN.R.R.L.QRKR.....LEQ. | |
Retrocopy | LHTLIKVCENNPYSRIDSRGQLALKIGVLQPRVQIWFQN*RFRFLAQRKRDPDQALEQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies |
retro_pabe_1192, retro_pabe_1328, retro_pabe_1805, retro_pabe_3357, retro_pabe_3376, retro_pabe_518, retro_pabe_660, retro_pabe_802 ,
|
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |