RetrogeneDB ID: | retro_mmul_2441 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:42871227..42871601(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSMMUG00000007788 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 74.22 % |
Parental protein coverage: | 64.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | TLESSHSQGQDQPGVEFQSREARRCRTTYSTSQLHTLIKAFVK-NPYPGIDSREELAKEIGVPESRVQIW |
TL.SS.S.GQDQPGVEFQ.REARRC.T.YSTSQLHTL.KAF.K.NPYPGIDSRE..A.EIG..ESRVQIW | |
Retrocopy | TLDSSQSHGQDQPGVEFQRREARRCHTIYSTSQLHTLFKAFMK<NPYPGIDSREQPAEEIGASESRVQIW |
Parental | FQNRRSRLLLQRKREPVASLEQEEQ-DKIPEGLQGTEDTQNGTNFSN-DSRFSGARTW |
FQNRRSR..L.RKREPV.SLEQE.Q..KI.EGLQGTEDTQN..N.....S.FS..R.W | |
Retrocopy | FQNRRSRFHLHRKREPVVSLEQEAQ>GKISEGLQGTEDTQNDSNLTS<HSHFSRVRAW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .04 RPM | 0 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |