RetrogeneDB ID: | retro_mmul_2363 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:103879375..103879958(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSMMUG00000007788 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 75. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MVTTNHRRSRTKFTEDQLKILINTFNQKPYPGYATKQKLALEINTEESRIQIWFQNRRARQRFQKRPEAD |
MV.TN.R.S..K.T.DQLKILINTFNQK...GY.TKQKL.L.INTEES.IQIWFQN.RAR..F.KRPE.. | |
Retrocopy | MVATNYRYSCSKLT-DQLKILINTFNQKLCSGYSTKQKLGL*INTEESKIQIWFQN*RARRGF*KRPEPE |
Parental | TLESSHSQGQDQPGVEFQSREARRCRTTYSTSQLHTLIKAFVKNPYPGIDSREELAKEIGVPESRVQIWF |
TLESS.S.GQDQPG.EFQSREARRC.TTYS.SQL..LIKAF.KNPY...DSR..LAKEI.VPESRVQIWF | |
Retrocopy | TLESSQSHGQDQPGAEFQSREARRCCTTYSASQLCPLIKAFLKNPYSRTDSRKQLAKEISVPESRVQIWF |
Parental | QNRRSRLLLQRKREPVASLEQEEQ-DKIPEGLQGTEDTQNGTNFSNDSRFSGARTW |
QNRRSR..LQRKREPV.SLEQE.Q..KI.E.LQGTEDTQNGT.....S.FS.ARTW | |
Retrocopy | QNRRSRFHLQRKREPVVSLEQEDQ>GKISERLQGTEDTQNGTTLTSSSHFSRARTW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4100 |
Pan troglodytes | retro_ptro_2781 |
Gorilla gorilla | retro_ggor_2752 |
Pongo abelii | retro_pabe_3357 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |