RetrogeneDB ID: | retro_hsap_2454 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 20:18623858..18624268(-) | ||
Located in intron of: | ENSG00000125821 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232136 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSG00000258873 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 69.93 % |
Parental protein coverage: | 69.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAEDTYSHKMVKTNHRRCRTKFTEEQLKILINTFNQKPYPGYATKQKLALEINTEES-RIQIWFQNRRAR |
MAED..SHKMV.T.HR...TKFTE..LKILIN.FNQK.Y..YA.KQKLALEINTE.S.RIQIWFQNRRAR | |
Retrocopy | MAEDNSSHKMVATSHRCSCTKFTED*LKILINSFNQKLYSDYAIKQKLALEINTEDSPRIQIWFQNRRAR |
Parental | HGFQKRPE-AETLESSQSQGQDQPGVEFQSREARRCRTTYSASQLHTLIKAFMKNPYPGIDSREELAKEI |
H.FQ.R....ETLESSQS..QDQPG.E...R..R....T...SQL.TL.KAFMKNPYPGIDSRE..AK.I | |
Retrocopy | HRFQERSD<PETLESSQSHKQDQPGRE--ARRCRTTYST---SQLRTLNKAFMKNPYPGIDSREQIAK*I |
Parental | GVP |
G.P | |
Retrocopy | GAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .04 RPM |
bodymap2_adrenal | 0 .00 RPM | 0 .00 RPM |
bodymap2_brain | 0 .02 RPM | 0 .00 RPM |
bodymap2_breast | 0 .00 RPM | 0 .00 RPM |
bodymap2_colon | 0 .00 RPM | 0 .00 RPM |
bodymap2_heart | 0 .02 RPM | 0 .04 RPM |
bodymap2_kidney | 0 .00 RPM | 0 .00 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .00 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .15 RPM |
bodymap2_ovary | 0 .02 RPM | 0 .00 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .00 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .00 RPM | 0 .02 RPM |
bodymap2_thyroid | 0 .00 RPM | 0 .00 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1418 |
Gorilla gorilla | retro_ggor_1528 |
Macaca mulatta | retro_mmul_636 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |