RetrogeneDB ID: | retro_pabe_1192 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:71673793..71674163(-) | ||
Located in intron of: | ENSPPYG00000005954 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSPPYG00000010457 | ||
Aliases: | None | ||
Description: | double homeobox A [Source:HGNC Symbol;Acc:32179] |
Percent Identity: | 52.71 % |
Parental protein coverage: | 60.78 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | KFTEEQLKILIDTFNQKPYPGYATKQKLALEI-NTEESRIQIWF-QNRRARHGFQKRPEAE-TLESSQSQ |
K..E.QLKI....FN.KP..G..T..KL.LE..NTEE.R.QIWF..N.RARH.FQ..PE.E.TLESSQ.. | |
Retrocopy | KLIEDQLKIFSGAFN*KPCLGCTTY*KLDLET<NTEECRVQIWF<LNQRARHLFQ**PEIE>TLESSQDH |
Parental | GQGQPGVQFQSREAR-RCRTTYSASQLHTLIKAFMKNPYPGIDSRE-ELAKEIGVPESR |
G.G......Q.R.AR..C...Y..SQL.TLIK.FM.N...GI..RE..L.KE....ES. | |
Retrocopy | G*GHTEEKIQDRGAR>GCYSSY-ISQLDTLIKTFMDNL*LGIVFRE>DLIKEVVILESK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .09 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies |
retro_pabe_1192 , retro_pabe_1328, retro_pabe_1805, retro_pabe_3357, retro_pabe_3376, retro_pabe_518, retro_pabe_660, retro_pabe_802,
|
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |