RetrogeneDB ID: | retro_ggor_510 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:56913166..56913778(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSGGOG00000005650 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MAEDTYSHKMVKTNHRRCRTKFTEEQLKILINTFNQKPYPGYATKQKLALEINTEESRIQIWFQNRRARH |
MA.DT.SHKMV.TN.R...TKFTE.QLKILINTFNQKPY..YATKQKLALEINTE..RIQIWFQN.RAR. | |
Retrocopy | MAKDTSSHKMVATNRRSNHTKFTEDQLKILINTFNQKPYADYATKQKLALEINTEKYRIQIWFQNQRARN |
Parental | GFQKRPEAETLESSQSQGQDQPGVEFQSREARRCRTTYSASQLHTLIKAFMKNPYPGIDSREELAKEIGV |
GFQKRPE.ETL.SSQS.GQDQPGVEFQSREARRC.TTYS.SQLHTLIKAFMKNPYPGIDSRE.LA.EIG. | |
Retrocopy | GFQKRPEPETLDSSQSHGQDQPGVEFQSREARRCHTTYSTSQLHTLIKAFMKNPYPGIDSREQLAEEIGA |
Parental | PESRVQIWFQ-NRRSRLLLQR-KREPVASLEQEEQ-GKIPEGLQGTEDTQNGTNFTS-DSHFSGARTW |
PESRVQIWFQ.N.RSR..LQR.KREPV.SLEQE.Q.GKI.EGLQGTEDTQNGTN.TS..SHFS.ARTW | |
Retrocopy | PESRVQIWFQ>N*RSRFHLQR<KREPVMSLEQEDQ>GKISEGLQGTEDTQNGTNLTS<HSHFSRARTW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_566 |
Pan troglodytes | retro_ptro_424 |
Pongo abelii | retro_pabe_518 |
Macaca mulatta | retro_mmul_2396 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies |
retro_ggor_1017, retro_ggor_1076, retro_ggor_1167, retro_ggor_1528, retro_ggor_2133, retro_ggor_2752, retro_ggor_510 ,
|
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |