RetrogeneDB ID: | retro_lafr_996 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_58:7086247..7086642(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUXA | ||
Ensembl ID: | ENSLAFG00000030167 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.96 % |
Parental protein coverage: | 77.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RKPYPNYATRQKLASEINIEEPRIQIWFQNRRARHPFRKRSKPEEALKSSQDHGQGDLEERSQARRSRTY |
.KPY..YA..QKLA.EIN..E.RI.IWF.NRR.RH.F..R....EAL.SSQDHGQ...EE..Q.R..R.Y | |
Retrocopy | KKPY*GYASKQKLALEINDVESRI*IWFPNRRVRHSF*RRPELKEALRSSQDHGQDHPEEKIQGREVRWY |
Parental | ---YNCSQLHILVEAFENNPYPGIVSREQLAEE-IGVPESRVQIWFQNRRSRLFSQAKKEPDED |
...Y..SQLH.L..AF...PYPGI.S.EQL..E.IGVP..RVQIWFQN.RS..FS..KK..D.D | |
Retrocopy | QISYTFSQLHTLIKAFKSSPYPGIDSGEQLGQE<IGVPKERVQIWFQNQRSG-FSAQKKMADDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025505 | 1 retrocopy | |
Felis catus | ENSFCAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000258873 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000005650 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000030167 | 1 retrocopy |
retro_lafr_996 ,
|
Macaca mulatta | ENSMMUG00000007788 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010886 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011331 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010457 | 8 retrocopies | |
Pan troglodytes | ENSPTRG00000028871 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003020 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005321 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014223 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014200 | 2 retrocopies |