RetrogeneDB ID: | retro_dnov_802 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_10903:5467..5870(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000011004 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSDNOG00000025236 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 79.43 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | LSSQRLAMGISRDNWHKRRK-TGGKRKP-YHKKRKYELGRPAANT-IGPRRIHTV-RVRGGNKKYRALRL |
LSSQ..AMGISRDNWHK..K..GG...P.Y.KK.K.ELGRPAANT.IGP..IHTV..V.GGN.KYRALRL | |
Retrocopy | LSSQHPAMGISRDNWHKCHK<AGGRGSP<YYKKGKDELGRPAANTKIGPSCIHTV<SV*GGNRKYRALRL |
Parental | DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPY-RQWYESHYALPLG-RKKGAK |
DVG.FSWGSE.CTRKTRII.VVYNAS.NEL.RTKTLVK.CIVLIDSTPY.RQWYESHYAL.LG.RKKGAK | |
Retrocopy | DVGDFSWGSEFCTRKTRIIHVVYNASDNELIRTKTLVKTCIVLIDSTPY<RQWYESHYALSLG<RKKGAK |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 666 .05 RPM |
SRP012922_cerebellum | 0 .00 RPM | 396 .60 RPM |
SRP012922_heart | 0 .00 RPM | 393 .99 RPM |
SRP012922_kidney | 0 .00 RPM | 728 .57 RPM |
SRP012922_liver | 0 .00 RPM | 389 .96 RPM |
SRP012922_lung | 0 .00 RPM | 975 .76 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 562 .18 RPM |
SRP012922_spleen | 0 .11 RPM | 1128 .24 RPM |