RetrogeneDB ID: | retro_acar_124 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:111886101..111886715(+) | ||
Located in intron of: | ENSACAG00000002424 | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000002593 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSACAG00000015697 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:G1KRF8] |
Percent Identity: | 91.35 % |
Parental protein coverage: | 99.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ISRDNWHKRRKTGG-KRKPYHKKRKYELGRPPANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSEC |
ISRDN.HK..KTG..KRKPYHKKRKYELGRPPANTKIGPRRIHTVRV.G.NKKYRAL.LDVGNFSWGSEC | |
Retrocopy | ISRDN*HKHCKTGE>KRKPYHKKRKYELGRPPANTKIGPRRIHTVRVCGRNKKYRALHLDVGNFSWGSEC |
Parental | CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYEAHYALPLGRKKGAKLT-PEEEEILNKK |
CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYEAHYALPLGRKKGAKLT..E.E.ILNKK | |
Retrocopy | CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYEAHYALPLGRKKGAKLT>EEKE-ILNKK |
Parental | RSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYLLEGKELEFYLRKIKARRGK |
.SKKIQ.KYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCG.ADG.L.EGKELEFYL.KIKARRGK | |
Retrocopy | CSKKIQ-KYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGGADGCLPEGKELEFYLSKIKARRGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 6 .73 RPM | 2721 .79 RPM |
SRP009831_brain | 0 .19 RPM | 325 .84 RPM |
SRP009831_dewlap | 0 .17 RPM | 533 .83 RPM |
SRP009831_embryo | 1 .84 RPM | 1198 .93 RPM |
SRP009831_heart | 0 .05 RPM | 703 .42 RPM |
SRP009831_liver | 0 .04 RPM | 1393 .50 RPM |
SRP009831_lung | 0 .10 RPM | 603 .87 RPM |
SRP009831_ovary | 0 .04 RPM | 338 .90 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 417 .10 RPM |