RetrogeneDB ID: | retro_etel_1264 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_237438:3820..4282(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSETEG00000009889 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 62.26 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTC-YLDAGLARTTTGNKVFGALKGAVDGGLSIPHST |
LL.R.G.DKI.E.Q..V.G.E..VESIDGQP.AFT..YLD.GL.R..TGNKV.GAL.GAV.GGLS.P..T | |
Retrocopy | LLGRSGTDKIHESQELVNGYECKVESIDGQPAAFTA<YLDVGLPRPSTGNKVLGALQGAVHGGLSLPY-T |
Parental | KRFPGYDSESKEFNAEVHRKHILGQN-VAEYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAT |
.RF...DSESK.FNAE.H.KH...Q...AE.M.Y.....EDA.K.Q.S..IKNN.T.D.MEEM..KAHA. | |
Retrocopy | *RFSVHDSESKGFNAEAHWKHTMAQS<LAECMLYNGRRVEDASKNQLSEHIKNNITADVMEEMDTKAHAP |
Parental | IRENPVYEKKPKR-DVKKK |
IRENPVYE..PK..DVK.K | |
Retrocopy | IRENPVYEIRPKK<DVKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |