RetrogeneDB ID:

retro_ggor_2178

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:5:68180001..68180722(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL5
Ensembl ID:ENSGGOG00000002699
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2178
AACAAAGATATCATTTATTATATTGTTTATGCCCATATAGACGGGGATATGATAGTCTGCACATCATATGCATACAAACT
GCCAAAATATGGTGTGAAGTTGGCCTGACAAATTATGCTGCAGTGTATTGGACAGGCCTGCTGCTGGCCCACAGGCTTCT
TAATAGATTTGGCGTGGACAAGATCTATGAAGGCCAAGTGGAGGTGACTGGCAATGAATACAATGTGGAAAGCATTGATG
GCTAGCCAGGTGCCTTTACCTGCTATTTGGACACAAGCCTTGCCAGAACTACCACTGGCAATAAAGTTTTTGGTGCCCTG
AAGGGAGCTGTCAATGGAAGCTTGTCTGTCCCTCACAGTACCAAACAATTCCCTGATTATGATTCTGAAAGCAAGGAATT
TAATGCAGAAGTACACAGGAAGCACATCATGGACCAGAATGTTGCAGAGTACATACACTACTTAATGGAAGATGCTTACA
AGAAAGAGTTCTCTCAATACATAAAGAATAGCATAACTCCAGACATGAAGGAGGAGATGTATAAGAAAGCTTATGCTGCT
ATACGAGAGAATCCAGTCTATGAATCTATGAAAAGAACCCCAAGAAAGAAGTTAAAAAGAAGAGGTGGAACCGTCCCAAA
ATGTCCCTTGCTCAGAAGAAAGATGGGGTAGCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGATGCAGGCTGCTGAGAG
C

ORF - retro_ggor_2178 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.71 %
Parental protein coverage: 79.28 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalNRDIICQIAYARIEGDMIVCAAYAHELPKYGVK-VGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV
N.DII..I.YA.I.GDMIVC..YA..LPKYGVK.VGLTNYAA.Y.TGLLLA.RLLNRFG.DKIYEGQVEV
RetrocopyNKDIIYYIVYAHIDGDMIVCTSYAYKLPKYGVK<VGLTNYAAVYWTGLLLAHRLLNRFGVDKIYEGQVEV
ParentalTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVH
TG.EYNVESIDG.PGAFTCYLD..LARTTTGNKVFGALKGAV.G.LS.PHSTK.FP.YDSESKEFNAEVH
RetrocopyTGNEYNVESIDG*PGAFTCYLDTSLARTTTGNKVFGALKGAVNGSLSVPHSTKQFPDYDSESKEFNAEVH
ParentalRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYE---KKPKK-EV
RKHIM.QNVA.Y..YLME...DAYKK.FSQYIKNS.TPDM.EEMYKKA.AAIRENPVYE.....P.K.EV
RetrocopyRKHIMDQNVAEYIHYLME---DAYKKEFSQYIKNSITPDMKEEMYKKAYAAIRENPVYESMKRTPRK<EV
ParentalKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
KKKRWNRPKMSLAQKKD.VAQKKASFLRAQ..AAES
RetrocopyKKKRWNRPKMSLAQKKDGVAQKKASFLRAQMQAAES

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 103 .48 RPM
SRP007412_cerebellum 0 .04 RPM 127 .93 RPM
SRP007412_heart 0 .03 RPM 69 .95 RPM
SRP007412_kidney 0 .04 RPM 355 .82 RPM
SRP007412_liver 0 .05 RPM 276 .52 RPM
SRP007412_testis 0 .10 RPM 255 .68 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2178 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2178 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3209

Parental genes homology:
Parental genes homology involve 14 parental genes, and 141 retrocopies.

Species Parental gene accession Retrocopies number
Erinaceus europaeus ENSEEUG000000028521 retrocopy
Echinops telfairi ENSETEG000000098898 retrocopies
Homo sapiens ENSG0000012240630 retrocopies
Gorilla gorilla ENSGGOG00000002699 24 retrocopies
Macropus eugenii ENSMEUG000000063613 retrocopies
Myotis lucifugus ENSMLUG000000089561 retrocopy
Monodelphis domestica ENSMODG000000116351 retrocopy
Nomascus leucogenys ENSNLEG000000105002 retrocopies
Ornithorhynchus anatinus ENSOANG000000046691 retrocopy
Otolemur garnettii ENSOGAG000000132466 retrocopies
Petromyzon marinus ENSPMAG000000020401 retrocopy
Pongo abelii ENSPPYG0000000115232 retrocopies
Pan troglodytes ENSPTRG0000000096330 retrocopies
Sarcophilus harrisii ENSSHAG000000064171 retrocopy



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