RetrogeneDB ID: | retro_ptro_2241 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:30013626..30014338(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSPTRG00000000963 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 86.01 % |
Parental protein coverage: | 81.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NRDIICQIAYARIEGDMIVCAAYAHELPKYGVK-VGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV |
N.DII..IAYARI.GDMIVCA.YA.ELPKYGVK.VGLTNYAA.Y.TGLLLA.RLLNRFG.DKIYEGQVEV | |
Retrocopy | NKDIIY*IAYARIDGDMIVCASYAYELPKYGVK<VGLTNYAAVYWTGLLLAHRLLNRFGVDKIYEGQVEV |
Parental | TGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVH |
TG.EYNVESIDGQPGAFTCYLD.GLARTTTGNKVFGALKGAV.G.LS.PHSTK.FPGYDSESKEFNAEVH | |
Retrocopy | TGNEYNVESIDGQPGAFTCYLDTGLARTTTGNKVFGALKGAVNGSLSVPHSTKQFPGYDSESKEFNAEVH |
Parental | RKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKR |
RKHIM.QNVA.Y..YLME...DAYKK.FSQYIKNS.TPDM.EEMYKKA.AAIRENPVYEK.PKKEVKKKR | |
Retrocopy | RKHIMDQNVAEYIHYLME---DAYKKEFSQYIKNSITPDMKEEMYKKAYAAIRENPVYEKNPKKEVKKKR |
Parental | WNRPKMSLAQK-KDRVAQKKASFLRAQERAAES |
WNRPKMSLAQ..KD.VAQKKASFLRAQ..AAES | |
Retrocopy | WNRPKMSLAQR<KDGVAQKKASFLRAQMQAAES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 144 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 175 .59 RPM |
SRP007412_heart | 0 .00 RPM | 212 .10 RPM |
SRP007412_kidney | 0 .03 RPM | 383 .05 RPM |
SRP007412_liver | 0 .00 RPM | 204 .59 RPM |
SRP007412_testis | 0 .00 RPM | 178 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2658 |