RetrogeneDB ID: | retro_hsap_3430 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:19348411..19349294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000218643 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSG00000122406 | ||
Aliases: | RPL5, DBA6, L5 | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 76.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE |
MGFVKVVK.KAYFKRY.VK.RR...GKTDYYA.K.LVI.DKNKYN.PKYR.IV.VT.RDIICQIAYA.I. | |
Retrocopy | MGFVKVVKSKAYFKRY*VKCRRQ*QGKTDYYAQKSLVI*DKNKYNMPKYRVIVCVTDRDIICQIAYAHIG |
Parental | GDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPG |
G.MI..AAYA.ELPK.GVKVGLTNYA.AYCTGLLLA.RLL.RFGMDKI.E.QVE..GDEYNV..ID.QPG | |
Retrocopy | GNMIMYAAYAYELPKHGVKVGLTNYAIAYCTGLLLACRLLSRFGMDKI*EVQVEMNGDEYNVKTIDAQPG |
Parental | AFTCYLDAGLARTTTGNKVFGALK-GAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMR |
AFTCYLDAGLARTT...K....L..G.VDGGL.IPH..KRFPGYDSESK.FNAEVH.K.IM..N.A.YM. | |
Retrocopy | AFTCYLDAGLARTT--DKLLWGLE>GVVDGGLLIPHNIKRFPGYDSESKKFNAEVHQKPIMDPNAAGYMC |
Parental | YLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDR |
YL.E.DEDAYKK.FS.YIKNS.T.D.M.EMYKKAHAAI.ENPVYEKK..KEV.KK.WN..KMSLAQKKD. | |
Retrocopy | YLIEKDEDAYKKCFS*YIKNSITSD-MKEMYKKAHAAI*ENPVYEKKSEKEV*KKKWNHLKMSLAQKKDQ |
Parental | VAQKKASFLRAQERAAES |
VAQKK.SFLRAQE.AA.S | |
Retrocopy | VAQKKTSFLRAQEQAAKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 831 .47 RPM |
bodymap2_adrenal | 0 .00 RPM | 1088 .69 RPM |
bodymap2_brain | 0 .00 RPM | 287 .02 RPM |
bodymap2_breast | 0 .00 RPM | 690 .73 RPM |
bodymap2_colon | 0 .00 RPM | 1255 .57 RPM |
bodymap2_heart | 0 .00 RPM | 286 .90 RPM |
bodymap2_kidney | 0 .00 RPM | 467 .21 RPM |
bodymap2_liver | 0 .00 RPM | 264 .66 RPM |
bodymap2_lung | 0 .00 RPM | 964 .12 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1025 .32 RPM |
bodymap2_ovary | 0 .00 RPM | 2109 .24 RPM |
bodymap2_prostate | 0 .00 RPM | 1546 .91 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 345 .73 RPM |
bodymap2_testis | 0 .00 RPM | 860 .64 RPM |
bodymap2_thyroid | 0 .00 RPM | 950 .21 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1265 .43 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2329 |
Gorilla gorilla | retro_ggor_2318 |
Pongo abelii | retro_pabe_2841 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |