Parental gene:

RPL5, ENSG00000122406

Aliases:RPL5, DBA6, L5
Description:ribosomal protein L5 [Source:HGNC Symbol;Acc:10360]
Organism:Human (Homo sapiens)
Coordinates:1:93297581..93307481(+)


>ENSG00000122406
ATGGGGTTTGTTAAAGTTGTTAAGAATAAGGCCTACTTTAAGAGATACCAAGTGAAATTTAGAAGACGACGAGAGGGTAA
AACTGATTATTATGCTCGGAAACGCTTGGTGATACAAGATAAAAATAAATACAACACACCCAAATACAGGATGATAGTTC
GTGTGACAAACAGAGATATCATTTGTCAGATTGCTTATGCCCGTATAGAGGGGGATATGATAGTCTGCGCAGCGTATGCA
CACGAACTGCCAAAATATGGTGTGAAGGTTGGCCTGACAAATTATGCTGCAGCATATTGTACTGGCCTGCTGCTGGCCCG
CAGGCTTCTCAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGACTGGTGATGAATACAATGTGGAAA
GCATTGATGGTCAGCCAGGTGCCTTCACCTGCTATTTGGATGCAGGCCTTGCCAGAACTACCACTGGCAATAAAGTTTTT
GGTGCCCTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCTGAAAG
CAAGGAATTTAATGCAGAAGTACATCGGAAGCACATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAG
AAGATGAAGATGCTTACAAGAAACAGTTCTCTCAATACATAAAGAACAGCGTAACTCCAGACATGATGGAGGAGATGTAT
AAGAAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCCAAGAAAGAAGTTAAAAAGAAGAGGTGGAA
CCGTCCCAAAATGTCCCTTGCTCAGAAGAAGGATCGGGTAGCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGGAGCGGG
CTGCTGAGAGCTAA

Library Parental gene expression (RPM)
bodymap2_adipose 831 .47 RPM
bodymap2_adrenal 1088 .69 RPM
bodymap2_brain 287 .02 RPM
bodymap2_breast 690 .73 RPM
bodymap2_colon 1255 .57 RPM
bodymap2_heart 286 .90 RPM
bodymap2_kidney 467 .21 RPM
bodymap2_liver 264 .66 RPM
bodymap2_lung 964 .12 RPM
bodymap2_lymph_node 1025 .32 RPM
bodymap2_ovary 2109 .24 RPM
bodymap2_prostate 1546 .91 RPM
bodymap2_skeletal_muscle 345 .73 RPM
bodymap2_testis 860 .64 RPM
bodymap2_thyroid 950 .21 RPM
bodymap2_white_blood_cells 1265 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Erinaceus europaeus ENSEEUG00000002852 ortholog_one2one 1 retrogene
retro_eeur_620,
Echinops telfairi ENSETEG00000009889 ortholog_one2one 8 retrogenes
retro_etel_1044, retro_etel_1089, retro_etel_1103, retro_etel_1264, retro_etel_2028, retro_etel_64, retro_etel_785, retro_etel_814,
Gorilla gorilla ENSGGOG00000002699 ortholog_one2one 24 retrogenes
retro_ggor_1129, retro_ggor_1172, retro_ggor_1206, retro_ggor_1342, retro_ggor_1343, retro_ggor_1656, retro_ggor_1934, retro_ggor_2052, retro_ggor_2130, retro_ggor_2178, retro_ggor_2243, retro_ggor_2318, retro_ggor_233, retro_ggor_2380, retro_ggor_264, retro_ggor_2649, retro_ggor_2715, retro_ggor_2755, retro_ggor_457, retro_ggor_521, retro_ggor_553, retro_ggor_622, retro_ggor_647, retro_ggor_996,
Macropus eugenii ENSMEUG00000006361 ortholog_one2one 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Myotis lucifugus ENSMLUG00000008956 possible_ortholog 1 retrogene
retro_mluc_925,
Monodelphis domestica ENSMODG00000011635 ortholog_one2one 1 retrogene
retro_mdom_748,
Nomascus leucogenys ENSNLEG00000010500 ortholog_one2many 2 retrogenes
retro_nleu_2102, retro_nleu_39,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_one2many 1 retrogene
retro_oana_97,
Otolemur garnettii ENSOGAG00000013246 ortholog_one2one 6 retrogenes
retro_ogar_1164, retro_ogar_134, retro_ogar_1627, retro_ogar_2374, retro_ogar_2633, retro_ogar_707,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2one 1 retrogene
retro_pmar_23,
Pongo abelii ENSPPYG00000001152 ortholog_one2many 32 retrogenes
retro_pabe_1053, retro_pabe_1219, retro_pabe_1274, retro_pabe_1307, retro_pabe_1331, retro_pabe_1501, retro_pabe_1918, retro_pabe_1931, retro_pabe_2019, retro_pabe_2123, retro_pabe_2238, retro_pabe_2457, retro_pabe_246, retro_pabe_247, retro_pabe_2640, retro_pabe_2641, retro_pabe_2658, retro_pabe_2813, retro_pabe_2841, retro_pabe_2909, retro_pabe_3247, retro_pabe_3320, retro_pabe_3360, retro_pabe_3534, retro_pabe_446, retro_pabe_447, retro_pabe_480, retro_pabe_51, retro_pabe_562, retro_pabe_572, retro_pabe_637, retro_pabe_740,
Pan troglodytes ENSPTRG00000000963 ortholog_one2one 30 retrogenes
retro_ptro_1038, retro_ptro_1068, retro_ptro_1184, retro_ptro_1326, retro_ptro_139, retro_ptro_1519, retro_ptro_1524, retro_ptro_1568, retro_ptro_169, retro_ptro_1744, retro_ptro_1878, retro_ptro_2005, retro_ptro_2241, retro_ptro_2262, retro_ptro_2264, retro_ptro_2329, retro_ptro_2391, retro_ptro_2674, retro_ptro_2742, retro_ptro_2785, retro_ptro_2941, retro_ptro_3027, retro_ptro_366, retro_ptro_433, retro_ptro_460, retro_ptro_470, retro_ptro_528, retro_ptro_577, retro_ptro_866, retro_ptro_997,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2one 1 retrogene
retro_shar_202,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_138 86.78 81.14
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2. retro_hsap_183 88.59 100.00
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3. retro_hsap_486 86.29 100.00
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4. retro_hsap_590 81.82 99.33
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5. retro_hsap_632 74.06 88.89
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6. retro_hsap_646 86.97 87.54
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7. retro_hsap_742 83.68 79.46
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8. retro_hsap_780 83.45 94.95
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9. retro_hsap_827 88.89 100.00
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10. retro_hsap_1266 80.19 69.36
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11. retro_hsap_1469 85.13 65.66
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12. retro_hsap_1539 91.95 100.00
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13. retro_hsap_1588 88.58 85.19
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14. retro_hsap_1767 77.47 84.18
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15. retro_hsap_1989 74.32 61.62
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16. retro_hsap_2143 87.80 82.83
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17. retro_hsap_2385 77.92 50.84
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18. retro_hsap_2594 93.27 100.00
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19. retro_hsap_2600 82.68 77.78
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20. retro_hsap_2777 78.07 99.66
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21. retro_hsap_2962 86.24 99.33
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22. retro_hsap_3105 60.26 51.52
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23. retro_hsap_3178 78.66 55.22
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24. retro_hsap_3181 81.37 54.21
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25. retro_hsap_3209 85.54 81.14
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26. retro_hsap_3430 76.51 100.00
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27. retro_hsap_3520 84.18 100.00
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28. retro_hsap_3941 86.73 76.09
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29. retro_hsap_4048 85.28 100.00
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30. retro_hsap_4104 84.08 67.34
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Download FASTA sequences of all ENSG00000122406 retrocopies