RetrogeneDB ID: | retro_etel_1089 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_209949:8514..8978(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000014374 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSETEG00000009889 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 90.45 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LLNRFGMDKIYEGQVEVTGDEYNVESIDGQ-PGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHST |
LLNRFGMDKIYEGQVEVTGDEYNVESIDG..PGAFTC.LDAGLA.TTT..KV.G.LKGAVD.GLSIPHST | |
Retrocopy | LLNRFGMDKIYEGQVEVTGDEYNVESIDGH<PGAFTC*LDAGLAKTTTRTKVLGTLKGAVDKGLSIPHST |
Parental | KRFPGYDSESKEFNAEVHRKHILGQNVAEYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHATI |
KRFP.YDSE.KEFNAEVHRKHILGQNVA.YM.YLMEEDEDAYKKQFSQYIKNNVTPDM.EEMYKKAHATI | |
Retrocopy | KRFPVYDSEGKEFNAEVHRKHILGQNVADYMCYLMEEDEDAYKKQFSQYIKNNVTPDM-EEMYKKAHATI |
Parental | RENPVYEKKPKRDVKKK |
RENPVYEKKPKRDVKK. | |
Retrocopy | RENPVYEKKPKRDVKKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |