RetrogeneDB ID: | retro_etel_785 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_163981:875..1342(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000011128 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSETEG00000009889 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 84.08 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKG-AVDGGLSIPHST |
LL.RFGMDKIYEGQVEVTG.EYNV.S..G.PGAFTCYLDAGLARTTTGN.VFGAL.G.AVDGGLS.PHST | |
Retrocopy | LLTRFGMDKIYEGQVEVTGEEYNVASPGGHPGAFTCYLDAGLARTTTGNTVFGALEG<AVDGGLSMPHST |
Parental | KRFPGYDSESKEFNAEVHRKHILGQNVAEYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHATI |
KRFPGYDSESK..NAEVHRKHI.GQN.A..MR.L.EEDEDAYKKQFSQYIKNNVTPDMMEE..KK.H.TI | |
Retrocopy | KRFPGYDSESKALNAEVHRKHIRGQNIAHDMRSLVEEDEDAYKKQFSQYIKNNVTPDMMEELDKKVHVTI |
Parental | RENPVYEKKPKRDVKKK |
.ENPVYEK.PK.DVKKK | |
Retrocopy | *ENPVYEKRPKKDVKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |