RetrogeneDB ID: | retro_etel_814 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_168120:4344..4799(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000016456 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSETEG00000009889 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 78.71 % |
Parental protein coverage: | 58.78 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LNRFGMDKIYEGQVEVTGDEYNVESIDGQPG-AFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTK |
L..FGMDKIYEGQVEVTG.EYNVESIDGQP..AF.C.LDAGLARTT.GN..F......VD.GLSIPHSTK | |
Retrocopy | LKKFGMDKIYEGQVEVTGAEYNVESIDGQPV<AFICDLDAGLARTTSGNRGFEV*R-VVDRGLSIPHSTK |
Parental | RFPGYDSESKEFNAEVHRKHILGQNVAEYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHATIR |
RFPGYDSESKEFN.EVHRKHILGQN.A.YM.YLMEE.EDAY..QFS..IKNNVTPD.MEEM.KKAHATI. | |
Retrocopy | RFPGYDSESKEFNVEVHRKHILGQNIADYMCYLMEEGEDAYRTQFSHCIKNNVTPD-MEEMDKKAHATI* |
Parental | ENPVYEKKPKRDVKK |
EN.VYEKKPKR..K. | |
Retrocopy | ENTVYEKKPKRG*KE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |