RetrogeneDB ID: | retro_ogar_2633 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873642.1:3192084..3192619(+) | ||
Located in intron of: | ENSOGAG00000002096 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSOGAG00000013246 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 67.4 % |
Parental protein coverage: | 60.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE |
KGF.K.VKN.AYFK...VKFRR..EG.TDYYA...LV.QD.NKYNTP...M.V..TNRDI.CQ.A.A..E | |
Retrocopy | KGFAKIVKNEAYFKTCEVKFRRQEEGSTDYYA*ICLVTQDENKYNTPEHQMAVNITNRDIVCQVACAQTE |
Parental | GDMIVCAAYAHELPKYGVKVGLTRNCQ-AYASGLLLAKMLLNRFGMDKIYEGQVEVTGDEYNVE-SIDGQ |
G.M.V.AA.AH.L..YGV.VGL....Q.AY..GLLLA..LL...G.DK..EGQVEVTG.E..VE.SID.Q | |
Retrocopy | GGMTV*AACAHKL*EYGVQVGLANYPQ<AYCPGLLLARGLLSMSGIDKVCEGQVEVTGHEHSVE<SIDAQ |
Parental | PGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKR |
PGAFTCYLDAGLARTTTGN.V.G.LKGA.DGG.SIPHSTK. | |
Retrocopy | PGAFTCYLDAGLARTTTGNNVLGELKGAGDGGVSIPHSTKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |