RetrogeneDB ID: | retro_ptro_2262 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:50082447..50083155(-) | ||
Located in intron of: | ENSPTRG00000016927 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSPTRG00000000963 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 79.75 % |
Parental protein coverage: | 79.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLN |
NK..TPKYR.I...TNRD.ICQIAYA.I.GDMIVC.AYAHELPKYGVK.GLT..AAAY..GLLLA.RL.N | |
Retrocopy | NKKHTPKYRLIAHITNRDTICQIAYAHI*GDMIVCTAYAHELPKYGVKIGLTSDAAAYYIGLLLAHRLFN |
Parental | RFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFP |
RFGMDKIYEGQ.EV.GDEYNVESID.QPG.F.CYLDAGLARTTTGNKVFG..K.A.DGGLSIPHSTK.FP | |
Retrocopy | RFGMDKIYEGQAEVIGDEYNVESIDVQPGVFICYLDAGLARTTTGNKVFGTPKEAMDGGLSIPHSTKQFP |
Parental | GYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENP |
GYDSESK.FN.EVH.KHIMGQNV.DYM.YLMEEDEDAYKKQFSQ.IKNSVT.DM...MYKKA.AA..ENP | |
Retrocopy | GYDSESK*FNVEVHQKHIMGQNVSDYMCYLMEEDEDAYKKQFSQHIKNSVTLDMIGKMYKKALAATGENP |
Parental | VYEKKPKKEVKKKRWNRPKMSLAQKKD |
VYE.KPKKEVK..RWN.PKMSL....D | |
Retrocopy | VYE-KPKKEVKMMRWNHPKMSLIKTID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 144 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 175 .59 RPM |
SRP007412_heart | 0 .00 RPM | 212 .10 RPM |
SRP007412_kidney | 0 .03 RPM | 383 .05 RPM |
SRP007412_liver | 0 .00 RPM | 204 .59 RPM |
SRP007412_testis | 0 .00 RPM | 178 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3181 |
Gorilla gorilla | retro_ggor_1342 |
Pongo abelii | retro_pabe_2641 |