Parental gene:

RPL5, ENSEEUG00000002852

Aliases:None
Description:ribosomal protein L5 [Source:HGNC Symbol;Acc:10360]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3019:584..7894(+)


>ENSEEUG00000002852
ATGGGGTTTGTTAAAGTTGTCAAAAATAAAGCCTACTTCAAGAGGTACCAAGTGAAATTTAGAAGACGGCGAGAGGGCAA
GACTGATTACTATGCTCGGAAACGCTTGGTGATTCAGGATAAGAATAAGTACAACACGCCCAAATACAGGATGATAGTTC
GAGTAACCCACAAAGACATCATTTGTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTTCTCAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTCGAGGTGACTGGAGATGAATACAATGTAGAAA
GCATTGATGGTCAGCCCGGTGCCTTCACTTGCTACTTAGATGCAGGGCTTGCCAGAACAACCACTGGAAATAAAGTTTTT
GGGGCCCTGAAGGGAGCTGTAGACGGAGGTTTGTCTATCCCTCACAGTACCAAACGATTTCCTGGCTATGATTCAGAAAG
TAAAGAATTCAATGCAGAAGTTCATCGGAAGCACATCATGGGCCAGAATGTTGCAGACTATATGCGTTACCTAATGGAAG
AAGATGAGGACGCTTACAAGAAACAGTTCTCTCAATATATCAAGAACAGTGTGACTCCAGACATGATGGAGGAGATGTAT
AAGAAAGCTCATACTGCTATACGAGAGAATCCAGTCTATGAAAAGAAGCCAAAGAAAGAAGTTAAAAAGAAGAGGTGGAA
CCGTCCCAAGATGTCCCTTGCCCAGAAGAAAGATAGGGTAGCTCAGAAGAAGGCAAGCTTCCTCAGAGCTCAGGAACGGG
CTGCTGAGAGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 58 .01 RPM
SRP017611_kidney 117 .59 RPM
SRP017611_liver 92 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000009889 ortholog_one2one 8 retrogenes
retro_etel_1044, retro_etel_1089, retro_etel_1103, retro_etel_1264, retro_etel_2028, retro_etel_64, retro_etel_785, retro_etel_814,
Homo sapiens ENSG00000122406 ortholog_one2one 30 retrogenes
retro_hsap_1266, retro_hsap_138, retro_hsap_1469, retro_hsap_1539, retro_hsap_1588, retro_hsap_1767, retro_hsap_183, retro_hsap_1989, retro_hsap_2143, retro_hsap_2385, retro_hsap_2594, retro_hsap_2600, retro_hsap_2777, retro_hsap_2962, retro_hsap_3105, retro_hsap_3178, retro_hsap_3181, retro_hsap_3209, retro_hsap_3430, retro_hsap_3520, retro_hsap_3941, retro_hsap_4048, retro_hsap_4104, retro_hsap_486, retro_hsap_590, retro_hsap_632, retro_hsap_646, retro_hsap_742, retro_hsap_780, retro_hsap_827,
Gorilla gorilla ENSGGOG00000002699 ortholog_one2one 24 retrogenes
retro_ggor_1129, retro_ggor_1172, retro_ggor_1206, retro_ggor_1342, retro_ggor_1343, retro_ggor_1656, retro_ggor_1934, retro_ggor_2052, retro_ggor_2130, retro_ggor_2178, retro_ggor_2243, retro_ggor_2318, retro_ggor_233, retro_ggor_2380, retro_ggor_264, retro_ggor_2649, retro_ggor_2715, retro_ggor_2755, retro_ggor_457, retro_ggor_521, retro_ggor_553, retro_ggor_622, retro_ggor_647, retro_ggor_996,
Macropus eugenii ENSMEUG00000006361 ortholog_one2many 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Myotis lucifugus ENSMLUG00000008956 possible_ortholog 1 retrogene
retro_mluc_925,
Monodelphis domestica ENSMODG00000011635 ortholog_one2many 1 retrogene
retro_mdom_748,
Nomascus leucogenys ENSNLEG00000010500 ortholog_one2many 2 retrogenes
retro_nleu_2102, retro_nleu_39,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_many2many 1 retrogene
retro_oana_97,
Otolemur garnettii ENSOGAG00000013246 ortholog_one2one 6 retrogenes
retro_ogar_1164, retro_ogar_134, retro_ogar_1627, retro_ogar_2374, retro_ogar_2633, retro_ogar_707,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2many 1 retrogene
retro_pmar_23,
Pongo abelii ENSPPYG00000001152 ortholog_one2many 32 retrogenes
retro_pabe_1053, retro_pabe_1219, retro_pabe_1274, retro_pabe_1307, retro_pabe_1331, retro_pabe_1501, retro_pabe_1918, retro_pabe_1931, retro_pabe_2019, retro_pabe_2123, retro_pabe_2238, retro_pabe_2457, retro_pabe_246, retro_pabe_247, retro_pabe_2640, retro_pabe_2641, retro_pabe_2658, retro_pabe_2813, retro_pabe_2841, retro_pabe_2909, retro_pabe_3247, retro_pabe_3320, retro_pabe_3360, retro_pabe_3534, retro_pabe_446, retro_pabe_447, retro_pabe_480, retro_pabe_51, retro_pabe_562, retro_pabe_572, retro_pabe_637, retro_pabe_740,
Pan troglodytes ENSPTRG00000000963 ortholog_one2one 30 retrogenes
retro_ptro_1038, retro_ptro_1068, retro_ptro_1184, retro_ptro_1326, retro_ptro_139, retro_ptro_1519, retro_ptro_1524, retro_ptro_1568, retro_ptro_169, retro_ptro_1744, retro_ptro_1878, retro_ptro_2005, retro_ptro_2241, retro_ptro_2262, retro_ptro_2264, retro_ptro_2329, retro_ptro_2391, retro_ptro_2674, retro_ptro_2742, retro_ptro_2785, retro_ptro_2941, retro_ptro_3027, retro_ptro_366, retro_ptro_433, retro_ptro_460, retro_ptro_470, retro_ptro_528, retro_ptro_577, retro_ptro_866, retro_ptro_997,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2many 1 retrogene
retro_shar_202,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_620 80.00 63.64
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Download FASTA sequences of all ENSEEUG00000002852 retrocopies