RetrogeneDB ID: | retro_fcat_1671 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:38840367..38840682(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSFCAG00000028400 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 72.22 % |
Parental protein coverage: | 69.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GFILYLV--WAFIPETWLNSLGLTYWPQKYWAIALPVYLLITIVIGYVLLFGINMMS-TSPLNSIHTITD |
GF.L.L.....F..E.WLNSLG.T.WPQ..WA.ALP.YLLI..VI.YV.LFGINMMS..SPLNSIHTITD | |
Retrocopy | GFALFLSSQFDFSLESWLNSLGCTSWPQ-HWAEALPAYLLISLVINYVPLFGINMMS<SSPLNSIHTITD |
Parental | NYA-KNQQRKNYQEEAIPALRDIPISEVNQMFFLAAKE |
NYA.KNQQ.K..Q.EAIPALRDIP.SE.NQMFFLAA.E | |
Retrocopy | NYA>KNQQQKKFQKEAIPALRDIPTSETNQMFFLAAQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .99 RPM |
SRP017611_liver | 0 .00 RPM | 7 .78 RPM |