RetrogeneDB ID: | retro_fcat_729 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:115406092..115406385(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSFCAG00000028400 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 75.76 % |
Parental protein coverage: | 65.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MIVFLSHRLSKATGK-MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPETWLNSLGLTYWPQKYW |
..V....RLSKATGK.MVENSP.PLPER.IY.FVL.LS.Q.GFILYL.WAFI.E..LNSLGLTY.PQ.YW | |
Retrocopy | LLVCVCWRLSKATGK<MVENSPLPLPERVIYAFVLSLSPQCGFILYLAWAFIAESLLNSLGLTYCPQNYW |
Parental | AIALPVYLLITIVIGYVLLFGINMMSTSP |
A..LPV.LLITIVIGYVLLFG.NMMS.SP | |
Retrocopy | AVTLPVCLLITIVIGYVLLFGVNMMSISP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .99 RPM |
SRP017611_liver | 0 .00 RPM | 7 .78 RPM |