RetrogeneDB ID: | retro_pvam_1100 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_28762:37..452(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSPVAG00000000857 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 77.46 % |
Parental protein coverage: | 89.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RLSKATGKMVENSPS-PLPERAIYGFVLFLSSQFGFMLYLVWAFIPESWLNSLGLTYWPQKYWAVALPVY |
RLSKATGKMVENS.S..L.ERA.YGFVLFLSSQF.F.LY.VWAFI.ESWLNS.GLT...QKYWAVA.PV. | |
Retrocopy | RLSKATGKMVENSLS<ALQERASYGFVLFLSSQFDFILYFVWAFITESWLNSSGLTFSLQKYWAVAFPVH |
Parental | LLITVVIGYVLLFGINMMSTSPLNSI-HTITDNYAKNQQQKKYQEEAIPALRDISISEVNQMFFLAANEL |
.L.TVVIGYVLL.GINMMSTS.LNSI..TI.DNY.KN.QQKKYQE.AI.ALRDI..SEVNQMFF..A.E. | |
Retrocopy | -LVTVVIGYVLLIGINMMSTSLLNSI<PTIADNYVKN*QQKKYQEDAISALRDIPFSEVNQMFFIVAKEI |
Parental | YT |
YT | |
Retrocopy | YT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |