RetrogeneDB ID: | retro_fcat_1859 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:65896347..65896783(-) | ||
Located in intron of: | ENSFCAG00000029097 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSFCAG00000028400 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 68.46 % |
Parental protein coverage: | 97.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | FLSHRLSKATGKMVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPETWLNSLGLTYWPQKYWAIAL |
F...RLS..T..MVENS..PLP.R.IYGF.LFLSSQFGFILY.VWAFIPE...NSLGLT.WPQKY.A.AL | |
Retrocopy | FRDPRLSEVTVEMVENSSLPLPQRVIYGFFLFLSSQFGFILYFVWAFIPEYRVNSLGLTCWPQKYRAVAL |
Parental | PVYLLITIVIGYVLLFGI-NMMSTSPLNSIHTITDNYAKNQQRKNYQEEAIPALR-DIPISEVNQMF-FL |
PV.LLITIVI...L.......MSTS.L.SIHTI..N.AKNQQ...YQEEAIPAL..DIPI.EVNQMF..L | |
Retrocopy | PVCLLITIVIYSYLEYLM<DIMSTS-LHSIHTIINNCAKNQQQNKYQEEAIPALNADIPIREVNQMF<LL |
Parental | AAKEHHTQN |
AAKE....N | |
Retrocopy | AAKELYAKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .99 RPM |
SRP017611_liver | 0 .00 RPM | 7 .78 RPM |