RetrogeneDB ID: | retro_fcat_181 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:139535764..139536202(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSFCAG00000028400 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 79.45 % |
Parental protein coverage: | 97.99 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | FLSHRLSKATGKMVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPETWLNSLGLTYWPQKYWAIAL |
F...RLSKATG.MVE.SP.PLPERA.YGF.LFLSSQ.GFILYL..AFI.E.WLNSLGLTYWPQKYWA.AL | |
Retrocopy | FEDPRLSKATGEMVEHSPPPLPERAMYGFGLFLSSQCGFILYLL*AFISESWLNSLGLTYWPQKYWAFAL |
Parental | PVYLLITIVIGYVLLFGINMMSTSPLNSIHTITDNYAKNQQRKNYQEEAIPALRDIPISEVNQMFFLAAK |
.VYLLITIVIGYVLL.GINMMSTS.LNS.H.ITDN.AKNQQ.K.Y.EEAIP.LRDIPISEV.Q.FFLA.K | |
Retrocopy | SVYLLITIVIGYVLLLGINMMSTSQLNSTHAITDN*AKNQQQKKYKEEAIPTLRDIPISEVSQKFFLAVK |
Parental | EHHTQN |
E..T.N | |
Retrocopy | ELCTKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .99 RPM |
SRP017611_liver | 0 .00 RPM | 7 .78 RPM |