RetrogeneDB ID: | retro_pabe_1787 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 20:31134103..31134502(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSPPYG00000011409 | ||
Aliases: | PIGP, DSCR5 | ||
Description: | phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Source:RefSeq peptide;Acc:NP_001127401] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 99.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPVYLLIAIVIGYV |
.EN..SPLPER.IYG.VL.LSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYW.VALP.Y.LI.IVIG.V | |
Retrocopy | MEN*LSPLPERPIYGLVLLLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWTVALPLYFLITIVIGCV |
Parental | LLFGINMMSTSPLDSIHTITDNYARNQQQKKYQEEAIPALRDISISEVNQMFFLAAKELYTEN |
LLFGINMMST..LDSI.TITDNYA.NQQQKKYQEEAIP.LR.ISISEVNQMFFLAAK.LYT.N | |
Retrocopy | LLFGINMMSTPSLDSIRTITDNYAKNQQQKKYQEEAIPELRAISISEVNQMFFLAAKDLYTKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 25 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .85 RPM |
SRP007412_heart | 0 .00 RPM | 9 .21 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .63 RPM |
SRP007412_liver | 0 .00 RPM | 5 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2423 |
Pan troglodytes | retro_ptro_1397 |
Gorilla gorilla | retro_ggor_1508 |
Macaca mulatta | retro_mmul_624 |