RetrogeneDB ID: | retro_ptro_156 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:62759904..62760194(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSPTRG00000013897 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 64.29 % |
Parental protein coverage: | 61.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RLSKAPG-KMVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPVY |
RLSKA.G....ENSP.PLPERA.YG.VLFL.SQFGF...L.W...PESWLNS..L.YW.QKYWAVALPVY | |
Retrocopy | RLSKAVG<IVMENSPLPLPERAMYGSVLFLNSQFGFMPCLLWTLAPESWLNSSCLNYWLQKYWAVALPVY |
Parental | LLIAIVIGYVLLFGINMMSTSPLDSIHT |
LL..IV..YVL.FG...MS.S.....H. | |
Retrocopy | LLNTIVTSYVLFFGTKVMSISLSTQLHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .22 RPM |
SRP007412_heart | 0 .00 RPM | 3 .76 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .70 RPM |
SRP007412_liver | 0 .00 RPM | 3 .04 RPM |
SRP007412_testis | 0 .00 RPM | 8 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_163 |
Pongo abelii | retro_pabe_464 |
Macaca mulatta | retro_mmul_377 |